References

This page contains all the scientific references of the documentation.

[1]

Raphael Couronne, Marie Vidailhet, Jean Christophe Corvol, Stephane Lehericy, and Stanley Durrleman. Learning Disease Progression Models With Longitudinal Data and Missing Values. In 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 1033–1037. April 2019. ISSN: 1945-8452. URL: https://ieeexplore.ieee.org/abstract/document/8759198 (visited on 2025-05-07), doi:10.1109/ISBI.2019.8759198.

[2]

Paul H. Gordon, Bin Cheng, Francois Salachas, Pierre-Francois Pradat, Gaelle Bruneteau, Philippe Corcia, Lucette Lacomblez, and Vincent Meininger. Progression in als is not linear but is curvilinear. Journal of Neurology, 257(10):1713–1717, October 2010. doi:10.1007/s00415-010-5609-1.

[3]

Sofia Kaisaridi, Dominique Herve, Aude Jabouley, Sonia Reyes, Carla Machado, Stéphanie Guey, Abbas Taleb, Fanny Fernandes, Hugues Chabriat, and Sophie Tezenas Du Montcel. Determining Clinical Disease Progression in Symptomatic Patients With CADASIL. Neurology, 104(1):e210193, January 2025. doi:10.1212/WNL.0000000000210193.

[4]

Igor Koval. Learning Multimodal Digital Models of Disease Progression from Longitudinal Data : Methods & Algorithms for the Description, Prediction and Simulation of Alzheimer’s Disease Progression. phdthesis, Institut Polytechnique de Paris, January 2020. URL: https://theses.hal.science/tel-02524279 (visited on 2025-05-07).

[5]

Igor Koval, Alexandre Bône, Maxime Louis, Thomas Lartigue, Simona Bottani, Arnaud Marcoux, Jorge Samper-González, Ninon Burgos, Benjamin Charlier, Anne Bertrand, Stéphane Epelbaum, Olivier Colliot, Stéphanie Allassonnière, and Stanley Durrleman. AD Course Map charts Alzheimer's disease progression. Scientific Reports, 11(1):8020, April 2021. doi:10.1038/s41598-021-87434-1.

[6]

Igor Koval, Thomas Dighiero-Brecht, Allan J. Tobin, Sarah J. Tabrizi, Rachael I. Scahill, Sophie Tezenas du Montcel, Stanley Durrleman, and Alexandra Durr. Forecasting individual progression trajectories in Huntington disease enables more powered clinical trials. Scientific Reports, 12(1):18928, November 2022. Publisher: Nature Publishing Group. URL: https://www.nature.com/articles/s41598-022-18848-8 (visited on 2025-05-07), doi:10.1038/s41598-022-18848-8.

[7]

Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, and Stanley Durrleman. Forecasting individual progression trajectories in Alzheimer’s disease. Nature Communications, 14(1):761, February 2023. Publisher: Nature Publishing Group. URL: https://www.nature.com/articles/s41467-022-35712-5 (visited on 2025-05-07), doi:10.1038/s41467-022-35712-5.

[8]

Răzvan V. Marinescu, Neil P. Oxtoby, Alexandra L. Young, Esther E. Bron, Arthur W. Toga, Michael W. Weiner, Frederik Barkhof, Nick C. Fox, Polina Golland, Stefan Klein, and Daniel C. Alexander. TADPOLE Challenge: Accurate Alzheimer’s disease prediction through crowdsourced forecasting of future data. PRedictive Intelligence in MEdicine. PRIME (Workshop), 11843:1–10, October 2019. URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7315046/ (visited on 2025-05-07), doi:10.1007/978-3-030-32281-6_1.

[9]

Paul Moulaire, Pierre Emmanuel Poulet, Emilien Petit, Thomas Klockgether, Alexandra Durr, Tetsuo Ashisawa, Sophie Tezenas du Montcel, and READISCA Consortium. Temporal Dynamics of the Scale for the Assessment and Rating of Ataxia in Spinocerebellar Ataxias. Movement Disorders: Official Journal of the Movement Disorder Society, 38(1):35–44, January 2023. doi:10.1002/mds.29255.

[10]

Juliette Ortholand. Joint modelling of events and repeated observations : an application to the progression of Amyotrophic Lateral Sclerosis. phdthesis, Sorbonne Université, September 2024. URL: https://theses.hal.science/tel-04770912 (visited on 2025-05-07).

[11]

Juliette Ortholand, Stanley Durrleman, and Sophie Tezenas du Montcel. A joint spatiotemporal model for multiple longitudinal markers and competing events. January 2025. arXiv:2501.08960 [stat]. URL: http://arxiv.org/abs/2501.08960 (visited on 2025-05-07), doi:10.48550/arXiv.2501.08960.

[12]

Juliette Ortholand, Pierre-François Pradat, Sophie Tezenas du Montcel, and Stanley Durrleman. Interaction of sex and onset site on the disease trajectory of amyotrophic lateral sclerosis. Journal of Neurology, 270(12):5903–5912, December 2023. doi:10.1007/s00415-023-11932-7.

[13]

Pierre-Emmanuel Poulet and Stanley Durrleman. Multivariate disease progression modeling with longitudinal ordinal data. Statistics in Medicine, 42(18):3164–3183, 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/sim.9770. URL: https://onlinelibrary.wiley.com/doi/abs/10.1002/sim.9770 (visited on 2025-05-07), doi:10.1002/sim.9770.

[14]

Pierre-Emmanuel Poulet, Maylis Tran, Sophie Tezenas du Montcel, Bruno Dubois, Stanley Durrleman, and Bruno Jedynak. Prediction-powered Inference for Clinical Trials. January 2025. Pages: 2025.01.15.25320578. URL: https://www.medrxiv.org/content/10.1101/2025.01.15.25320578v1 (visited on 2025-05-14), doi:10.1101/2025.01.15.25320578.

[15]

Pauli Virtanen, Ralf Gommers, Travis E. Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright, Stéfan J. van der Walt, Matthew Brett, Joshua Wilson, K. Jarrod Millman, Nikolay Mayorov, Andrew R. J. Nelson, Eric Jones, Robert Kern, Eric Larson, C J Carey, İlhan Polat, Yu Feng, Eric W. Moore, Jake VanderPlas, Denis Laxalde, Josef Perktold, Robert Cimrman, Ian Henriksen, E. A. Quintero, Charles R. Harris, Anne M. Archibald, Antônio H. Ribeiro, Fabian Pedregosa, Paul van Mulbregt, and SciPy 1.0 Contributors. SciPy 1.0: Fundamental Algorithms for Scientific Computing in Python. Nature Methods, 17:261–272, 2020. doi:10.1038/s41592-019-0686-2.