leaspy.models package

Subpackages

• leaspy.models.utils package
  • Subpackages
    • leaspy.models.utils.attributes package
      • Submodules
      • Module contents
    • leaspy.models.utils.initialization package
      • Submodules
      • Module contents
  • Submodules
    • leaspy.models.utils.noise_struct module
      • MultinomialDistribution
      • NoiseStruct
      • check_scale_is_compat_with_model_dimension()
      • check_scale_is_positive()
      • check_scale_is_univariate()
      • convert_input_to_1D_float_tensors()
      • validate_dimension_of_scale_factory()
    • leaspy.models.utils.noise_model module
      • NoiseModel
      • constant_return_factory()
  • Module contents

Submodules

• leaspy.models.abstract_model module
  • AbstractModel
    • AbstractModel.compute_individual_ages_from_biomarker_values()
    • AbstractModel.compute_individual_ages_from_biomarker_values_tensorized()
    • AbstractModel.compute_individual_attachment_tensorized()
    • AbstractModel.compute_individual_tensorized()
    • AbstractModel.compute_individual_trajectory()
    • AbstractModel.compute_jacobian_tensorized()
    • AbstractModel.compute_regularity_realization()
    • AbstractModel.compute_regularity_variable()
    • AbstractModel.compute_sufficient_statistics()
    • AbstractModel.compute_sum_squared_per_ft_tensorized()
    • AbstractModel.compute_sum_squared_tensorized()
    • AbstractModel.get_individual_realization_names()
    • AbstractModel.get_param_from_real()
    • AbstractModel.get_population_realization_names()
    • AbstractModel.initialize()
    • AbstractModel.initialize_realizations_for_model()
    • AbstractModel.load_hyperparameters()
    • AbstractModel.load_parameters()
    • AbstractModel.move_to_device()
    • AbstractModel.random_variable_informations()
    • AbstractModel.save()
    • AbstractModel.smart_initialization_realizations()
    • AbstractModel.time_reparametrization()
    • AbstractModel.update_model_parameters_burn_in()
    • AbstractModel.update_model_parameters_normal()
• leaspy.models.abstract_multivariate_model module
  • AbstractMultivariateModel
    • AbstractMultivariateModel.compute_individual_ages_from_biomarker_values()
    • AbstractMultivariateModel.compute_individual_ages_from_biomarker_values_tensorized()
    • AbstractMultivariateModel.compute_individual_attachment_tensorized()
    • AbstractMultivariateModel.compute_individual_tensorized()
    • AbstractMultivariateModel.compute_individual_trajectory()
    • AbstractMultivariateModel.compute_jacobian_tensorized()
    • AbstractMultivariateModel.compute_mean_traj()
    • AbstractMultivariateModel.compute_ordinal_pdf_from_ordinal_sf()
    • AbstractMultivariateModel.compute_ordinal_sf_from_ordinal_pdf()
    • AbstractMultivariateModel.compute_regularity_realization()
    • AbstractMultivariateModel.compute_regularity_variable()
    • AbstractMultivariateModel.compute_sufficient_statistics()
    • AbstractMultivariateModel.compute_sum_squared_per_ft_tensorized()
    • AbstractMultivariateModel.compute_sum_squared_tensorized()
    • AbstractMultivariateModel.get_individual_realization_names()
    • AbstractMultivariateModel.get_param_from_real()
    • AbstractMultivariateModel.get_population_realization_names()
    • AbstractMultivariateModel.initialize()
    • AbstractMultivariateModel.initialize_MCMC_toolbox()
    • AbstractMultivariateModel.initialize_realizations_for_model()
    • AbstractMultivariateModel.is_ordinal
    • AbstractMultivariateModel.load_hyperparameters()
    • AbstractMultivariateModel.load_parameters()
    • AbstractMultivariateModel.move_to_device()
    • AbstractMultivariateModel.postprocess_model_estimation()
    • AbstractMultivariateModel.random_variable_informations()
    • AbstractMultivariateModel.save()
    • AbstractMultivariateModel.smart_initialization_realizations()
    • AbstractMultivariateModel.time_reparametrization()
    • AbstractMultivariateModel.update_MCMC_toolbox()
    • AbstractMultivariateModel.update_model_parameters_burn_in()
    • AbstractMultivariateModel.update_model_parameters_normal()
• leaspy.models.model_factory module
  • ModelFactory
    • ModelFactory.model()
• leaspy.models.multivariate_model module
  • MultivariateModel
    • MultivariateModel.SUBTYPES_SUFFIXES
    • MultivariateModel.compute_individual_ages_from_biomarker_values()
    • MultivariateModel.compute_individual_ages_from_biomarker_values_tensorized()
    • MultivariateModel.compute_individual_ages_from_biomarker_values_tensorized_logistic()
    • MultivariateModel.compute_individual_attachment_tensorized()
    • MultivariateModel.compute_individual_tensorized()
    • MultivariateModel.compute_individual_tensorized_linear()
    • MultivariateModel.compute_individual_tensorized_logistic()
    • MultivariateModel.compute_individual_trajectory()
    • MultivariateModel.compute_jacobian_tensorized()
    • MultivariateModel.compute_jacobian_tensorized_linear()
    • MultivariateModel.compute_jacobian_tensorized_logistic()
    • MultivariateModel.compute_mean_traj()
    • MultivariateModel.compute_ordinal_pdf_from_ordinal_sf()
    • MultivariateModel.compute_ordinal_sf_from_ordinal_pdf()
    • MultivariateModel.compute_regularity_realization()
    • MultivariateModel.compute_regularity_variable()
    • MultivariateModel.compute_sufficient_statistics()
    • MultivariateModel.compute_sum_squared_per_ft_tensorized()
    • MultivariateModel.compute_sum_squared_tensorized()
    • MultivariateModel.get_individual_realization_names()
    • MultivariateModel.get_param_from_real()
    • MultivariateModel.get_population_realization_names()
    • MultivariateModel.initialize()
    • MultivariateModel.initialize_MCMC_toolbox()
    • MultivariateModel.initialize_realizations_for_model()
    • MultivariateModel.is_ordinal
    • MultivariateModel.load_hyperparameters()
    • MultivariateModel.load_parameters()
    • MultivariateModel.move_to_device()
    • MultivariateModel.postprocess_model_estimation()
    • MultivariateModel.random_variable_informations()
    • MultivariateModel.save()
    • MultivariateModel.smart_initialization_realizations()
    • MultivariateModel.time_reparametrization()
    • MultivariateModel.update_MCMC_toolbox()
    • MultivariateModel.update_model_parameters_burn_in()
    • MultivariateModel.update_model_parameters_normal()
• leaspy.models.multivariate_parallel_model module
  • MultivariateParallelModel
    • MultivariateParallelModel.compute_individual_ages_from_biomarker_values()
    • MultivariateParallelModel.compute_individual_ages_from_biomarker_values_tensorized()
    • MultivariateParallelModel.compute_individual_attachment_tensorized()
    • MultivariateParallelModel.compute_individual_tensorized()
    • MultivariateParallelModel.compute_individual_trajectory()
    • MultivariateParallelModel.compute_jacobian_tensorized()
    • MultivariateParallelModel.compute_mean_traj()
    • MultivariateParallelModel.compute_ordinal_pdf_from_ordinal_sf()
    • MultivariateParallelModel.compute_ordinal_sf_from_ordinal_pdf()
    • MultivariateParallelModel.compute_regularity_realization()
    • MultivariateParallelModel.compute_regularity_variable()
    • MultivariateParallelModel.compute_sufficient_statistics()
    • MultivariateParallelModel.compute_sum_squared_per_ft_tensorized()
    • MultivariateParallelModel.compute_sum_squared_tensorized()
    • MultivariateParallelModel.get_individual_realization_names()
    • MultivariateParallelModel.get_param_from_real()
    • MultivariateParallelModel.get_population_realization_names()
    • MultivariateParallelModel.initialize()
    • MultivariateParallelModel.initialize_MCMC_toolbox()
    • MultivariateParallelModel.initialize_realizations_for_model()
    • MultivariateParallelModel.is_ordinal
    • MultivariateParallelModel.load_hyperparameters()
    • MultivariateParallelModel.load_parameters()
    • MultivariateParallelModel.move_to_device()
    • MultivariateParallelModel.postprocess_model_estimation()
    • MultivariateParallelModel.random_variable_informations()
    • MultivariateParallelModel.save()
    • MultivariateParallelModel.smart_initialization_realizations()
    • MultivariateParallelModel.time_reparametrization()
    • MultivariateParallelModel.update_MCMC_toolbox()
    • MultivariateParallelModel.update_model_parameters_burn_in()
    • MultivariateParallelModel.update_model_parameters_normal()
• leaspy.models.univariate_model module
  • UnivariateModel
    • UnivariateModel.SUBTYPES_SUFFIXES
    • UnivariateModel.compute_individual_ages_from_biomarker_values()
    • UnivariateModel.compute_individual_ages_from_biomarker_values_tensorized()
    • UnivariateModel.compute_individual_ages_from_biomarker_values_tensorized_logistic()
    • UnivariateModel.compute_individual_attachment_tensorized()
    • UnivariateModel.compute_individual_tensorized()
    • UnivariateModel.compute_individual_tensorized_linear()
    • UnivariateModel.compute_individual_tensorized_logistic()
    • UnivariateModel.compute_individual_trajectory()
    • UnivariateModel.compute_jacobian_tensorized()
    • UnivariateModel.compute_jacobian_tensorized_linear()
    • UnivariateModel.compute_jacobian_tensorized_logistic()
    • UnivariateModel.compute_mean_traj()
    • UnivariateModel.compute_ordinal_pdf_from_ordinal_sf()
    • UnivariateModel.compute_ordinal_sf_from_ordinal_pdf()
    • UnivariateModel.compute_regularity_realization()
    • UnivariateModel.compute_regularity_variable()
    • UnivariateModel.compute_sufficient_statistics()
    • UnivariateModel.compute_sum_squared_per_ft_tensorized()
    • UnivariateModel.compute_sum_squared_tensorized()
    • UnivariateModel.get_individual_realization_names()
    • UnivariateModel.get_param_from_real()
    • UnivariateModel.get_population_realization_names()
    • UnivariateModel.initialize()
    • UnivariateModel.initialize_MCMC_toolbox()
    • UnivariateModel.initialize_realizations_for_model()
    • UnivariateModel.is_ordinal
    • UnivariateModel.load_hyperparameters()
    • UnivariateModel.load_parameters()
    • UnivariateModel.move_to_device()
    • UnivariateModel.postprocess_model_estimation()
    • UnivariateModel.random_variable_informations()
    • UnivariateModel.save()
    • UnivariateModel.smart_initialization_realizations()
    • UnivariateModel.time_reparametrization()
    • UnivariateModel.update_MCMC_toolbox()
    • UnivariateModel.update_model_parameters_burn_in()
    • UnivariateModel.update_model_parameters_normal()
• leaspy.models.generic_model module
  • GenericModel
    • GenericModel.compute_individual_trajectory()
    • GenericModel.dimension
    • GenericModel.get_hyperparameters()
    • GenericModel.hyperparameters_ok()
    • GenericModel.initialize()
    • GenericModel.load_hyperparameters()
    • GenericModel.load_parameters()
    • GenericModel.save()
    • GenericModel.validate_compatibility_of_dataset()
• leaspy.models.lme_model module
  • LMEModel
    • LMEModel.compute_individual_trajectory()
    • LMEModel.dimension
    • LMEModel.get_hyperparameters()
    • LMEModel.hyperparameters_ok()
    • LMEModel.initialize()
    • LMEModel.load_hyperparameters()
    • LMEModel.load_parameters()
    • LMEModel.save()
    • LMEModel.validate_compatibility_of_dataset()
• leaspy.models.constant_model module
  • ConstantModel
    • ConstantModel.compute_individual_trajectory()
    • ConstantModel.dimension
    • ConstantModel.get_hyperparameters()
    • ConstantModel.hyperparameters_ok()
    • ConstantModel.initialize()
    • ConstantModel.load_hyperparameters()
    • ConstantModel.load_parameters()
    • ConstantModel.save()
    • ConstantModel.validate_compatibility_of_dataset()

Module contents